Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12898138 | chr14:36122533 | T/C | 5.15E-6 | 489 | 16.08 | 16.07 | 8.33 | KM Plot |
| THCA | rs12899590 | chr15:41267697 | A/G | 0.000301 | 481 | 17 | 16.67 | 14.67 | KM Plot |
| THCA | rs12905926 | chr15:41283408 | G/A | 0.000315 | 485 | 16.67 | 16.8 | 14.37 | KM Plot |
| THCA | rs12910027 | chr15:41283817 | A/T | 0.000316 | 484 | 16.67 | 16.8 | 14.37 | KM Plot |
| THCA | rs12919474 | chr16:20781947 | T/G | 4.75E-5 | 490 | 16.38 | 14.63 | 17.47 | KM Plot |
| THCA | rs12921597 | chr16:20770640 | G/A | 5.07E-13 | 489 | 15.97 | 14.85 | 13.6 | KM Plot |
| THCA | rs12921986 | chr16:72312727 | C/T | 0 | 490 | 17.77 | 17.3 | 15.63 | KM Plot |
| THCA | rs12927459 | chr16:72343979 | C/T | 3.68E-11 | 475 | 16.02 | 15.1 | 14.63 | KM Plot |
| THCA | rs12928747 | chr16:20686915 | A/G | 1.56E-6 | 475 | 15.77 | 17.47 | 42.77 | KM Plot |
| THCA | rs12931010 | chr16:20599090 | G/A | 3.87E-6 | 481 | 15.93 | 16.4 | 14.27 | KM Plot |
| THCA | rs12932513 | chr16:20794983 | A/G | 4.94E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs12934252 | chr16:20760423 | T/C | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs12941552 | chr17:49216187 | C/T | 6.68E-5 | 468 | 16.13 | 15.9 | 10.93 | KM Plot |
| THCA | rs12945934 | chr17:57481923 | G/T | 2.27E-6 | 475 | 16.22 | 14.9 | 17.62 | KM Plot |
| THCA | rs12971645 | chr19:45807945 | G/A | 0.000122 | 473 | 15.52 | 16.3 | 14.67 | KM Plot |